HCSGD entry for LRIF1
1. General information
| Official gene symbol | LRIF1 |
|---|---|
| Entrez ID | 55791 |
| Gene full name | ligand dependent nuclear receptor interacting factor 1 |
| Other gene symbols | C1orf103 RIF1 RP11-96K19.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0016363 | Nuclear matrix | IEA | cellular_component |
| GO:0042974 | Retinoic acid receptor binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0016655028 | 0.8067147981 | 0.1094376238 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.9795768426 |
| GSE13712_SHEAR | Up | 0.5329452838 |
| GSE13712_STATIC | Up | 0.2883728271 |
| GSE19018 | Up | 0.3347057652 |
| GSE19899_A1 | Up | 1.0452208850 |
| GSE19899_A2 | Up | 1.1415739799 |
| PubMed_21979375_A1 | Up | 1.5185396198 |
| PubMed_21979375_A2 | Up | 0.8771094476 |
| GSE35957 | Up | 0.0232433360 |
| GSE36640 | Up | 1.0008195286 |
| GSE54402 | Up | 0.7345162009 |
| GSE9593 | Up | 0.6200637217 |
| GSE43922 | Up | 0.2266736041 |
| GSE24585 | Up | 0.4888707001 |
| GSE37065 | Up | 0.5756047342 |
| GSE28863_A1 | Down | -0.3503530275 |
| GSE28863_A2 | Up | 0.0413086356 |
| GSE28863_A3 | Down | -0.8908199209 |
| GSE28863_A4 | Down | -0.5116063431 |
| GSE48662 | Down | -0.4668643459 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020641 | Reporter assay;Other | Functional MTI | 20584899 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
