HCSGD entry for CSGALNACT1

1. General information

Official gene symbolCSGALNACT1
Entrez ID55790
Gene full namechondroitin sulfate N-acetylgalactosaminyltransferase 1
Other gene symbolsCSGalNAcT-1 ChGn beta4GalNAcT
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000139Golgi membraneTAScellular_component
GO:0001958Endochondral ossificationIEAbiological_process
GO:0005622IntracellularICcellular_component
GO:0005975Carbohydrate metabolic processTASbiological_process
GO:0007399Nervous system developmentNASbiological_process
GO:0008037Cell recognitionNASbiological_process
GO:0008283Cell proliferationNASbiological_process
GO:0008376Acetylgalactosaminyltransferase activityIDA ISSmolecular_function
GO:0008955Peptidoglycan glycosyltransferase activityIDAmolecular_function
GO:0009653Anatomical structure morphogenesisNASbiological_process
GO:0015014Heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic processNASbiological_process
GO:0015020Glucuronosyltransferase activityIDAmolecular_function
GO:0016758Transferase activity, transferring hexosyl groupsIEAmolecular_function
GO:0019276UDP-N-acetylgalactosamine metabolic processIDAbiological_process
GO:0030166Proteoglycan biosynthetic processISSbiological_process
GO:0030173Integral component of Golgi membraneNAScellular_component
GO:0030198Extracellular matrix organizationIEA NASbiological_process
GO:0030203Glycosaminoglycan metabolic processTASbiological_process
GO:0030204Chondroitin sulfate metabolic processIEA TASbiological_process
GO:0030206Chondroitin sulfate biosynthetic processIDA TASbiological_process
GO:0030210Heparin biosynthetic processNASbiological_process
GO:0032580Golgi cisterna membraneIEAcellular_component
GO:0044281Small molecule metabolic processTASbiological_process
GO:0046398UDP-glucuronate metabolic processIDAbiological_process
GO:0046872Metal ion bindingNASmolecular_function
GO:0047237Glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activityIDAmolecular_function
GO:0047238Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activityIDAmolecular_function
GO:0050650Chondroitin sulfate proteoglycan biosynthetic processISSbiological_process
GO:0050651Dermatan sulfate proteoglycan biosynthetic processISSbiological_process
GO:0050653Chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic processIDAbiological_process
GO:0051216Cartilage developmentIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.11672177350.02143523800.70062344360.2835606030

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0240010303
GSE13712_SHEARDown-0.6878251413
GSE13712_STATICDown-2.9616711652
GSE19018Down-0.1449426007
GSE19899_A1Down-0.4846898808
GSE19899_A2Down-0.6639946249
PubMed_21979375_A1Down-0.1452905328
PubMed_21979375_A2Up0.4618965823
GSE35957Up0.8759140214
GSE36640Up0.0818006444
GSE54402Down-1.0625857967
GSE9593Down-0.4374794132
GSE43922Up0.3444800250
GSE24585Up0.0278249413
GSE37065Up0.7820346106
GSE28863_A1Up0.1947423825
GSE28863_A2Down-0.3790745221
GSE28863_A3Up0.7414153519
GSE28863_A4Up0.2930867100
GSE48662Down-0.1653819746

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT017694MicroarrayFunctional MTI (Weak)18185580
hsa-miR-124-3pMIMAT0000422MIRT022557MicroarrayFunctional MTI (Weak)18668037
hsa-miR-126-5pMIMAT0000444MIRT045696CLASHFunctional MTI (Weak)23622248
hsa-miR-16-5pMIMAT0000069MIRT051118CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.