HCSGD entry for DEPDC1B
1. General information
| Official gene symbol | DEPDC1B |
|---|---|
| Entrez ID | 55789 |
| Gene full name | DEP domain containing 1B |
| Other gene symbols | BRCC3 XTP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005096 | GTPase activator activity | IEA | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | TAS | biological_process |
| GO:0035556 | Intracellular signal transduction | IEA | biological_process |
| GO:0051056 | Regulation of small GTPase mediated signal transduction | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9939695338 | 0.0000415144 | 0.9999902473 | 0.0109660000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.3862695411 |
| GSE13712_SHEAR | Down | -0.4839686508 |
| GSE13712_STATIC | Down | -0.3052161505 |
| GSE19018 | Down | -0.2462751862 |
| GSE19899_A1 | Down | -0.7202233884 |
| GSE19899_A2 | Down | -4.4815518004 |
| PubMed_21979375_A1 | Down | -1.7478013469 |
| PubMed_21979375_A2 | Down | -5.7663942079 |
| GSE35957 | Down | -2.5859853325 |
| GSE36640 | Down | -3.8731641672 |
| GSE54402 | Down | -1.1000552391 |
| GSE9593 | Down | -2.2084230821 |
| GSE43922 | Down | -0.6770869096 |
| GSE24585 | Up | 0.1043839478 |
| GSE37065 | Down | -0.1414580529 |
| GSE28863_A1 | Down | -0.2725461538 |
| GSE28863_A2 | Up | 0.2731707477 |
| GSE28863_A3 | Down | -0.5927951469 |
| GSE28863_A4 | Up | 0.2287039942 |
| GSE48662 | Down | -0.6021038433 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-361-5p | MIMAT0000703 | MIRT020076 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
