HCSGD entry for PRPF40A
1. General information
| Official gene symbol | PRPF40A |
|---|---|
| Entrez ID | 55660 |
| Gene full name | PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) |
| Other gene symbols | FBP-11 FBP11 FLAF1 FNBP3 HIP-10 HIP10 HYPA NY-REN-6 Prp40 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0007010 | Cytoskeleton organization | IMP | biological_process |
| GO:0007049 | Cell cycle | IEA | biological_process |
| GO:0008360 | Regulation of cell shape | IMP | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0016363 | Nuclear matrix | IDA | cellular_component |
| GO:0016477 | Cell migration | IMP | biological_process |
| GO:0016607 | Nuclear speck | IEA | cellular_component |
| GO:0032465 | Regulation of cytokinesis | IMP | biological_process |
| GO:0051301 | Cell division | IEA | biological_process |
| GO:0070064 | Proline-rich region binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7533845561 | 0.3236925649 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0911321306 |
| GSE13712_SHEAR | Down | -0.0597105807 |
| GSE13712_STATIC | Down | -0.1273668811 |
| GSE19018 | Down | -0.4082545073 |
| GSE19899_A1 | Up | 0.0801484936 |
| GSE19899_A2 | Up | 0.0461581044 |
| PubMed_21979375_A1 | Up | 0.3904936863 |
| PubMed_21979375_A2 | Up | 0.1582480103 |
| GSE35957 | Down | -0.1643977033 |
| GSE36640 | Down | -0.4082902435 |
| GSE54402 | Up | 0.0699506499 |
| GSE9593 | Down | -0.1336467505 |
| GSE43922 | Up | 0.1100203051 |
| GSE24585 | Up | 0.0306195248 |
| GSE37065 | Down | -0.0081855679 |
| GSE28863_A1 | Down | -0.0645187230 |
| GSE28863_A2 | Up | 0.4830014655 |
| GSE28863_A3 | Down | -0.6935619462 |
| GSE28863_A4 | Down | -0.1548363210 |
| GSE48662 | Down | -0.1518799874 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT005210 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025248 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-32-5p | MIMAT0000090 | MIRT028328 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-455-3p | MIMAT0004784 | MIRT037858 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
