HCSGD entry for LRRC16A
1. General information
| Official gene symbol | LRRC16A |
|---|---|
| Entrez ID | 55604 |
| Gene full name | leucine rich repeat containing 16A |
| Other gene symbols | CARMIL CARMIL1 CARMIL1a LRRC16 dJ501N12.1 dJ501N12.5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0007015 | Actin filament organization | NAS | biological_process |
| GO:0007596 | Blood coagulation | TAS | biological_process |
| GO:0016477 | Cell migration | IMP | biological_process |
| GO:0030027 | Lamellipodium | IDA | cellular_component |
| GO:0030032 | Lamellipodium assembly | IMP | biological_process |
| GO:0031529 | Ruffle organization | IMP | biological_process |
| GO:0046415 | Urate metabolic process | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5256133088 | 0.1416290377 | 0.9999902473 | 0.7239887163 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1542005571 |
| GSE13712_SHEAR | Down | -1.2132786308 |
| GSE13712_STATIC | Down | -0.7763434966 |
| GSE19018 | Down | -0.1268076714 |
| GSE19899_A1 | Up | 0.0764299777 |
| GSE19899_A2 | Down | -0.3357314534 |
| PubMed_21979375_A1 | Up | 0.1806650132 |
| PubMed_21979375_A2 | Down | -0.1009829048 |
| GSE35957 | Up | 0.0318159116 |
| GSE36640 | Down | -0.2078310699 |
| GSE54402 | Down | -0.2617728787 |
| GSE9593 | Up | 0.4963194235 |
| GSE43922 | Down | -0.6558315430 |
| GSE24585 | Up | 0.0269440146 |
| GSE37065 | Up | 0.0241633281 |
| GSE28863_A1 | Up | 0.4594108237 |
| GSE28863_A2 | Up | 0.7838365380 |
| GSE28863_A3 | Down | -0.1123084041 |
| GSE28863_A4 | Up | 0.0240308881 |
| GSE48662 | Up | 0.0628227100 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-149-5p | MIMAT0000450 | MIRT045492 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
