HCSGD entry for CSGALNACT2

1. General information

Official gene symbolCSGALNACT2
Entrez ID55454
Gene full namechondroitin sulfate N-acetylgalactosaminyltransferase 2
Other gene symbolsCHGN2 GALNACT-2 GALNACT2
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000139Golgi membraneTAScellular_component
GO:0005975Carbohydrate metabolic processTASbiological_process
GO:0008376Acetylgalactosaminyltransferase activityIDAmolecular_function
GO:0030166Proteoglycan biosynthetic processIDAbiological_process
GO:0030173Integral component of Golgi membraneNAScellular_component
GO:0030203Glycosaminoglycan metabolic processTASbiological_process
GO:0030204Chondroitin sulfate metabolic processTASbiological_process
GO:0030206Chondroitin sulfate biosynthetic processTASbiological_process
GO:0032580Golgi cisterna membraneIEAcellular_component
GO:0044281Small molecule metabolic processTASbiological_process
GO:0046872Metal ion bindingIEAmolecular_function
GO:0047237Glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activityIEAmolecular_function
GO:0050650Chondroitin sulfate proteoglycan biosynthetic processIDAbiological_process
GO:0050651Dermatan sulfate proteoglycan biosynthetic processIDAbiological_process
GO:0050652Dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic processTASbiological_process
GO:0050653Chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic processTASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.00023148440.98449109840.04367183101.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.5004399750
GSE13712_SHEARUp0.3916135963
GSE13712_STATICUp0.3074338280
GSE19018Down-1.1297008734
GSE19899_A1Up1.3975921845
GSE19899_A2Up1.5372947635
PubMed_21979375_A1Up2.5626893000
PubMed_21979375_A2Up1.5438096678
GSE35957Up0.3183889269
GSE36640Up2.5651195847
GSE54402Up1.1563519745
GSE9593Up0.5429080735
GSE43922Up2.0667017269
GSE24585Down-0.0073681186
GSE37065Up0.5021178520
GSE28863_A1Up0.4586245112
GSE28863_A2Up0.6374095121
GSE28863_A3Down-0.0186330604
GSE28863_A4Down-0.0006090327
GSE48662Down-0.2104383227

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-215-5pMIMAT0000272MIRT024661MicroarrayFunctional MTI (Weak)19074876
hsa-miR-192-5pMIMAT0000222MIRT026540MicroarrayFunctional MTI (Weak)19074876
hsa-miR-26b-5pMIMAT0000083MIRT029723MicroarrayFunctional MTI (Weak)19088304
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.