HCSGD entry for LRRC59
1. General information
| Official gene symbol | LRRC59 |
|---|---|
| Entrez ID | 55379 |
| Gene full name | leucine rich repeat containing 59 |
| Other gene symbols | p34 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005635 | Nuclear envelope | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0042645 | Mitochondrial nucleoid | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7353860986 | 0.3026763991 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0293181503 |
| GSE13712_SHEAR | Up | 0.3777512553 |
| GSE13712_STATIC | Up | 0.3761284025 |
| GSE19018 | Down | -0.0905078598 |
| GSE19899_A1 | Up | 0.0781085334 |
| GSE19899_A2 | Down | -0.0595672333 |
| PubMed_21979375_A1 | Up | 0.1051408574 |
| PubMed_21979375_A2 | Up | 0.0638780318 |
| GSE35957 | Down | -0.1383352442 |
| GSE36640 | Down | -0.1170263709 |
| GSE54402 | Up | 0.2068581409 |
| GSE9593 | Down | -0.0912695155 |
| GSE43922 | Up | 0.0103772580 |
| GSE24585 | Down | -0.3712500992 |
| GSE37065 | Down | -0.2406745419 |
| GSE28863_A1 | Down | -0.3796964835 |
| GSE28863_A2 | Up | 0.1623313341 |
| GSE28863_A3 | Down | -0.0095944168 |
| GSE28863_A4 | Up | 0.1014774471 |
| GSE48662 | Down | -0.6954956474 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020860 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020860 | Reporter assay;Other | Functional MTI | 20584899 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025787 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043353 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-106b-5p | MIMAT0000680 | MIRT044334 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10b-5p | MIMAT0000254 | MIRT047442 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-31-5p | MIMAT0000089 | MIRT049898 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
