HCSGD entry for VPS53
1. General information
| Official gene symbol | VPS53 |
|---|---|
| Entrez ID | 55275 |
| Gene full name | vacuolar protein sorting 53 homolog (S. cerevisiae) |
| Other gene symbols | HCCS1 hVps53L pp13624 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000938 | GARP complex | IDA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0010008 | Endosome membrane | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0865920444 | 0.9761814635 | 0.6173686349 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0636614669 |
| GSE13712_SHEAR | Up | 0.0995760688 |
| GSE13712_STATIC | Up | 0.0598002323 |
| GSE19018 | Down | -0.0373508924 |
| GSE19899_A1 | Up | 0.1227202700 |
| GSE19899_A2 | Up | 0.3668095541 |
| PubMed_21979375_A1 | Up | 0.3154372698 |
| PubMed_21979375_A2 | Up | 0.5002178748 |
| GSE35957 | Up | 0.1477188252 |
| GSE36640 | Up | 0.6504077596 |
| GSE54402 | Up | 0.2818587073 |
| GSE9593 | Up | 0.3979785712 |
| GSE43922 | Down | -0.0415517046 |
| GSE24585 | Up | 0.0233542321 |
| GSE37065 | Down | -0.1438895532 |
| GSE28863_A1 | Up | 0.5571421518 |
| GSE28863_A2 | Up | 0.2206082791 |
| GSE28863_A3 | Down | -0.0561800283 |
| GSE28863_A4 | Down | -0.0623084801 |
| GSE48662 | Up | 0.1497894437 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023608 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036899 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-28-3p | MIMAT0004502 | MIRT038949 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-328-3p | MIMAT0000752 | MIRT043781 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT046870 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
