HCSGD entry for SMU1
1. General information
| Official gene symbol | SMU1 |
|---|---|
| Entrez ID | 55234 |
| Gene full name | smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) |
| Other gene symbols | BWD RP11-54K16.3 SMU-1 fSAP57 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8179245393 | 0.5095975875 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1468928996 |
| GSE13712_SHEAR | Up | 0.0069043262 |
| GSE13712_STATIC | Down | -0.1009455059 |
| GSE19018 | Down | -0.2766048154 |
| GSE19899_A1 | Up | 0.0126456214 |
| GSE19899_A2 | Up | 0.0168674942 |
| PubMed_21979375_A1 | Down | -0.1106576284 |
| PubMed_21979375_A2 | Up | 0.0960940438 |
| GSE35957 | Down | -0.0292448927 |
| GSE36640 | Down | -0.0693486539 |
| GSE54402 | Up | 0.0650489096 |
| GSE9593 | Down | -0.1171353496 |
| GSE43922 | Down | -0.0002238078 |
| GSE24585 | Up | 0.0409940120 |
| GSE37065 | Up | 0.0223822289 |
| GSE28863_A1 | Down | -0.0615613423 |
| GSE28863_A2 | Down | -0.0369959238 |
| GSE28863_A3 | Up | 0.0052586456 |
| GSE28863_A4 | Up | 0.1445113309 |
| GSE48662 | Down | -0.2136321753 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-548o-3p | MIMAT0005919 | MIRT035846 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1296-5p | MIMAT0005794 | MIRT036086 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-2-3p | MIMAT0004550 | MIRT038699 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
