HCSGD entry for RIF1
1. General information
| Official gene symbol | RIF1 |
|---|---|
| Entrez ID | 55183 |
| Gene full name | RAP1 interacting factor homolog (yeast) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000077 | DNA damage checkpoint | IEA | biological_process |
| GO:0000781 | Chromosome, telomeric region | IEA | cellular_component |
| GO:0001939 | Female pronucleus | IEA | cellular_component |
| GO:0001940 | Male pronucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005819 | Spindle | IEA | cellular_component |
| GO:0019827 | Stem cell maintenance | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8968686866 | 0.0339001216 | 0.9999902473 | 0.3473277929 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1910841604 |
| GSE13712_SHEAR | Up | 0.1229999563 |
| GSE13712_STATIC | Up | 0.0213529014 |
| GSE19018 | Down | -0.1527035688 |
| GSE19899_A1 | Down | -0.0434185500 |
| GSE19899_A2 | Down | -0.6316753335 |
| PubMed_21979375_A1 | Down | -0.2201306061 |
| PubMed_21979375_A2 | Down | -0.5110676266 |
| GSE35957 | Down | -0.4148094231 |
| GSE36640 | Down | -0.9372257920 |
| GSE54402 | Up | 0.0819718966 |
| GSE9593 | Down | -0.2160580432 |
| GSE43922 | Down | -0.1499813562 |
| GSE24585 | Down | -0.0811673755 |
| GSE37065 | Down | -0.0642479395 |
| GSE28863_A1 | Up | 0.7460038775 |
| GSE28863_A2 | Up | 1.0558583142 |
| GSE28863_A3 | Down | -0.5169442244 |
| GSE28863_A4 | Down | -0.2429975776 |
| GSE48662 | Down | -0.6580127561 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020847 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027046 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031776 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-421 | MIMAT0003339 | MIRT039429 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT044974 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT047132 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048790 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT050377 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
