HCSGD entry for SHQ1
1. General information
| Official gene symbol | SHQ1 |
|---|---|
| Entrez ID | 55164 |
| Gene full name | SHQ1, H/ACA ribonucleoprotein assembly factor |
| Other gene symbols | Shq1p |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0015030 | Cajal body | IDA | cellular_component |
| GO:0022618 | Ribonucleoprotein complex assembly | IDA | biological_process |
| GO:0043065 | Positive regulation of apoptotic process | IDA | biological_process |
| GO:2000233 | Negative regulation of rRNA processing | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3557192698 | 0.1114491129 | 0.9999902473 | 0.6394347864 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2581774273 |
| GSE13712_SHEAR | Down | -0.3498699534 |
| GSE13712_STATIC | Up | 0.0429761139 |
| GSE19018 | Down | -1.2820516521 |
| GSE19899_A1 | Down | -0.1473002062 |
| GSE19899_A2 | Up | 0.1164445941 |
| PubMed_21979375_A1 | Up | 1.0307068282 |
| PubMed_21979375_A2 | Up | 0.5678814148 |
| GSE35957 | Down | -0.3162245709 |
| GSE36640 | Down | -0.5507876053 |
| GSE54402 | Down | -0.0805025566 |
| GSE9593 | Down | -0.1606400402 |
| GSE43922 | Up | 0.3989229671 |
| GSE24585 | Down | -0.0955462620 |
| GSE37065 | Up | 0.0491595000 |
| GSE28863_A1 | Up | 0.2709889819 |
| GSE28863_A2 | Up | 0.2308889401 |
| GSE28863_A3 | Down | -0.5762847519 |
| GSE28863_A4 | Down | -0.2325818176 |
| GSE48662 | Down | -0.1457261897 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040815 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
