HCSGD entry for TMEM38B
1. General information
| Official gene symbol | TMEM38B |
|---|---|
| Entrez ID | 55151 |
| Gene full name | transmembrane protein 38B |
| Other gene symbols | C9orf87 D4Ertd89e OI14 TRIC-B TRICB bA219P18.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005261 | Cation channel activity | IEA | molecular_function |
| GO:0005267 | Potassium channel activity | TAS | molecular_function |
| GO:0015672 | Monovalent inorganic cation transport | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0031965 | Nuclear membrane | NAS | cellular_component |
| GO:0033017 | Sarcoplasmic reticulum membrane | NAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0005141370 | 0.9591777364 | 0.0638739535 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 1.5814931555 |
| GSE13712_SHEAR | Up | 0.1043338113 |
| GSE13712_STATIC | Up | 0.8174484102 |
| GSE19018 | Down | -0.0670114033 |
| GSE19899_A1 | Up | 1.4241889200 |
| GSE19899_A2 | Up | 0.5934639002 |
| PubMed_21979375_A1 | Up | 1.5815886370 |
| PubMed_21979375_A2 | Up | 1.3322537097 |
| GSE35957 | Down | -0.1104036651 |
| GSE36640 | Up | 0.9022208137 |
| GSE54402 | Up | 1.4880895633 |
| GSE9593 | Up | 0.4228401501 |
| GSE43922 | Up | 1.1019702085 |
| GSE24585 | Up | 0.1566604163 |
| GSE37065 | Up | 0.8025555867 |
| GSE28863_A1 | Down | -0.3427678346 |
| GSE28863_A2 | Up | 0.7719067389 |
| GSE28863_A3 | Down | -0.4210980254 |
| GSE28863_A4 | Down | -0.0287453413 |
| GSE48662 | Down | -0.1861829835 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-7-5p | MIMAT0000252 | MIRT025820 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027604 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
