HCSGD entry for PRPF38B
1. General information
| Official gene symbol | PRPF38B |
|---|---|
| Entrez ID | 55119 |
| Gene full name | PRP38 pre-mRNA processing factor 38 (yeast) domain containing B |
| Other gene symbols | NET1 RP11-293A10.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005681 | Spliceosomal complex | IEA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8637143308 | 0.0312528399 | 0.9999902473 | 0.3315622733 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4475905156 |
| GSE13712_SHEAR | Up | 0.1877192883 |
| GSE13712_STATIC | Down | -0.2576360946 |
| GSE19018 | Down | -1.0155781967 |
| GSE19899_A1 | Down | -0.1563824266 |
| GSE19899_A2 | Down | -0.5540831352 |
| PubMed_21979375_A1 | Down | -0.7204766511 |
| PubMed_21979375_A2 | Down | -0.1379955287 |
| GSE35957 | Down | -0.3401641204 |
| GSE36640 | Up | 0.3459002074 |
| GSE54402 | Down | -0.1852502682 |
| GSE9593 | Down | -0.8341067599 |
| GSE43922 | Up | 0.0567425965 |
| GSE24585 | Down | -0.3289750083 |
| GSE37065 | Down | -0.0748973647 |
| GSE28863_A1 | Up | 0.2578244056 |
| GSE28863_A2 | Up | 0.5777355393 |
| GSE28863_A3 | Up | 0.1722979482 |
| GSE28863_A4 | Down | -0.0753965442 |
| GSE48662 | Down | -0.0670193582 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-101-3p | MIMAT0000099 | MIRT027254 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036833 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-5p | MIMAT0004748 | MIRT038040 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
