HCSGD entry for SAMD4B
1. General information
| Official gene symbol | SAMD4B |
|---|---|
| Entrez ID | 55095 |
| Gene full name | sterile alpha motif domain containing 4B |
| Other gene symbols | SMGB hSmaug2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2079984385 | 0.7652426314 | 0.8794058304 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0922842309 |
| GSE13712_SHEAR | Down | -0.0288578129 |
| GSE13712_STATIC | Down | -0.1365826191 |
| GSE19018 | Up | 0.0112848419 |
| GSE19899_A1 | Up | 0.0173712441 |
| GSE19899_A2 | Up | 0.2842416314 |
| PubMed_21979375_A1 | Up | 0.1366504833 |
| PubMed_21979375_A2 | Up | 0.4286532430 |
| GSE35957 | Up | 0.0895061241 |
| GSE36640 | Up | 0.0097470783 |
| GSE54402 | Up | 0.4241230642 |
| GSE9593 | Up | 0.0959367904 |
| GSE43922 | Up | 0.0049487062 |
| GSE24585 | Down | -0.3979246521 |
| GSE37065 | Up | 0.0194993462 |
| GSE28863_A1 | Up | 0.4492146591 |
| GSE28863_A2 | Up | 0.2333225178 |
| GSE28863_A3 | Up | 0.0739988833 |
| GSE28863_A4 | Down | -0.0737746421 |
| GSE48662 | Up | 0.1533830168 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-744-5p | MIMAT0004945 | MIRT037495 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-5p | MIMAT0004792 | MIRT037801 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-3p | MIMAT0004509 | MIRT038908 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044463 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30d-5p | MIMAT0000245 | MIRT047801 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048758 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052494 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
