HCSGD entry for SLC38A4
1. General information
| Official gene symbol | SLC38A4 |
|---|---|
| Entrez ID | 55089 |
| Gene full name | solute carrier family 38, member 4 |
| Other gene symbols | ATA3 NAT3 PAAT |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0006811 | Ion transport | TAS | biological_process |
| GO:0006814 | Sodium ion transport | IEA | biological_process |
| GO:0006865 | Amino acid transport | TAS | biological_process |
| GO:0015171 | Amino acid transmembrane transporter activity | IEA | molecular_function |
| GO:0015293 | Symporter activity | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0055085 | Transmembrane transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9745217431 | 0.0005568026 | 0.9999902473 | 0.0441433735 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1232256680 |
| GSE13712_SHEAR | Down | -0.1097153971 |
| GSE13712_STATIC | Down | -0.0184745169 |
| GSE19018 | Down | -0.3357416159 |
| GSE19899_A1 | Down | -0.2409627762 |
| GSE19899_A2 | Down | -1.9875885411 |
| PubMed_21979375_A1 | Down | -1.8799619243 |
| PubMed_21979375_A2 | Down | -1.9655334513 |
| GSE35957 | Down | -0.0601837493 |
| GSE36640 | Up | 0.6314178716 |
| GSE54402 | Down | -1.9575161698 |
| GSE9593 | Down | -0.2186337249 |
| GSE43922 | Down | -1.5365323124 |
| GSE24585 | Up | 0.1845888538 |
| GSE37065 | Up | 0.0152792851 |
| GSE28863_A1 | Down | -1.3213984017 |
| GSE28863_A2 | Down | -0.6812495186 |
| GSE28863_A3 | Down | -1.2674263531 |
| GSE28863_A4 | Up | 0.2698003995 |
| GSE48662 | Down | -0.0259198970 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017627 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
