HCSGD entry for PTCD3
1. General information
| Official gene symbol | PTCD3 |
|---|---|
| Entrez ID | 55037 |
| Gene full name | pentatricopeptide repeat domain 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0006417 | Regulation of translation | IEA | biological_process |
| GO:0019843 | RRNA binding | IDA | molecular_function |
| GO:0032543 | Mitochondrial translation | IMP | biological_process |
| GO:0043024 | Ribosomal small subunit binding | IDA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5349225713 | 0.1702272216 | 0.9999902473 | 0.7982452699 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0581264341 |
| GSE13712_SHEAR | Up | 0.0605096445 |
| GSE13712_STATIC | Up | 0.2442366131 |
| GSE19018 | Down | -0.2509072657 |
| GSE19899_A1 | Down | -0.0991847413 |
| GSE19899_A2 | Up | 0.5485035877 |
| PubMed_21979375_A1 | Up | 0.5398170913 |
| PubMed_21979375_A2 | Up | 0.8390893950 |
| GSE35957 | Down | -0.2550631741 |
| GSE36640 | Down | -0.6002641181 |
| GSE54402 | Down | -0.0787909623 |
| GSE9593 | Down | -0.2847554179 |
| GSE43922 | Down | -0.0343102166 |
| GSE24585 | Down | -0.0398494931 |
| GSE37065 | Down | -0.0170415239 |
| GSE28863_A1 | Up | 0.0172540250 |
| GSE28863_A2 | Up | 0.5077341504 |
| GSE28863_A3 | Down | -0.8824048392 |
| GSE28863_A4 | Down | -0.2940393948 |
| GSE48662 | Up | 0.1449050707 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT005269 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028845 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-361-5p | MIMAT0000703 | MIRT044063 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT047373 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
