HCSGD entry for PRPF39
1. General information
| Official gene symbol | PRPF39 |
|---|---|
| Entrez ID | 55015 |
| Gene full name | PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8098349113 | 0.0275430151 | 0.9999902473 | 0.3157489983 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0179451604 |
| GSE13712_SHEAR | Up | 0.3323964104 |
| GSE13712_STATIC | Up | 0.0403282213 |
| GSE19018 | Down | -0.5663307264 |
| GSE19899_A1 | Up | 0.2412919496 |
| GSE19899_A2 | Down | -0.4266762237 |
| PubMed_21979375_A1 | Down | -0.7298830595 |
| PubMed_21979375_A2 | Down | -0.3578459789 |
| GSE35957 | Down | -0.2251133721 |
| GSE36640 | Down | -0.2187220426 |
| GSE54402 | Down | -0.3956586324 |
| GSE9593 | Down | -0.6267891545 |
| GSE43922 | Up | 0.0556952427 |
| GSE24585 | Down | -0.0528709826 |
| GSE37065 | Up | 0.1143943550 |
| GSE28863_A1 | Up | 0.1644322685 |
| GSE28863_A2 | Up | 0.2062526206 |
| GSE28863_A3 | Down | -0.7087910145 |
| GSE28863_A4 | Up | 0.1380973307 |
| GSE48662 | Down | -0.5707847082 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-21-5p | MIMAT0000076 | MIRT031015 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
