HCSGD entry for C1orf56
1. General information
| Official gene symbol | C1orf56 |
|---|---|
| Entrez ID | 54964 |
| Gene full name | chromosome 1 open reading frame 56 |
| Other gene symbols | MENT RP11-316M1.9 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
Not in the Gene ontology4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2409482239 | 0.6393619011 | 0.9278709876 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0397566036 |
| GSE13712_SHEAR | Down | -0.3335780806 |
| GSE13712_STATIC | Down | -0.5523133927 |
| GSE19018 | Down | -0.1113155528 |
| GSE19899_A1 | Down | -0.0943011921 |
| GSE19899_A2 | Up | 0.1097311081 |
| PubMed_21979375_A1 | Up | 0.8054029110 |
| PubMed_21979375_A2 | Up | 0.1447052756 |
| GSE35957 | Down | -0.1697787826 |
| GSE36640 | Up | 0.1734828617 |
| GSE54402 | Up | 0.5394356353 |
| GSE9593 | Up | 0.1163133297 |
| GSE43922 | Down | -0.1744376089 |
| GSE24585 | Up | 0.5687542736 |
| GSE37065 | Up | 0.0307807813 |
| GSE28863_A1 | Up | 0.0210327967 |
| GSE28863_A2 | Up | 0.3253941029 |
| GSE28863_A3 | Up | 0.0910537983 |
| GSE28863_A4 | Down | -0.2955352283 |
| GSE48662 | Up | 0.4315931432 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT003848 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-374b-5p | MIMAT0004955 | MIRT016035 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031607 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042608 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
