HCSGD entry for TRMT10C
1. General information
| Official gene symbol | TRMT10C |
|---|---|
| Entrez ID | 54931 |
| Gene full name | tRNA methyltransferase 10 homolog C (S. cerevisiae) |
| Other gene symbols | HNYA MRPP1 RG9MTD1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000964 | Mitochondrial RNA 5'-end processing | IMP | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0008033 | TRNA processing | IEA | biological_process |
| GO:0008168 | Methyltransferase activity | IEA | molecular_function |
| GO:0042645 | Mitochondrial nucleoid | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0251544128 | 0.2331551081 | 0.3728209342 | 0.9301933182 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6118994967 |
| GSE13712_SHEAR | Down | -0.0655071130 |
| GSE13712_STATIC | Up | 0.1428112383 |
| GSE19018 | Down | -0.7331642814 |
| GSE19899_A1 | Up | 1.3234492226 |
| GSE19899_A2 | Up | 0.9460122058 |
| PubMed_21979375_A1 | Up | 1.3919042178 |
| PubMed_21979375_A2 | Up | 0.9020173774 |
| GSE35957 | Down | -0.1739474313 |
| GSE36640 | Down | -0.0972409725 |
| GSE54402 | Up | 0.5699466089 |
| GSE9593 | Down | -0.6579116206 |
| GSE43922 | Up | 0.6862055727 |
| GSE24585 | Down | -0.5857045469 |
| GSE37065 | Up | 0.1130230519 |
| GSE28863_A1 | Down | -0.0830040298 |
| GSE28863_A2 | Up | 0.1373671222 |
| GSE28863_A3 | Down | -0.5520970673 |
| GSE28863_A4 | Down | -0.2278050285 |
| GSE48662 | Down | -0.2781313938 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031383 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
