HCSGD entry for BNC2
1. General information
| Official gene symbol | BNC2 |
|---|---|
| Entrez ID | 54796 |
| Gene full name | basonuclin 2 |
| Other gene symbols | BSN2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003416 | Endochondral bone growth | IEA | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0043586 | Tongue development | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0060021 | Palate development | IEA | biological_process |
| GO:0060485 | Mesenchyme development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1880038334 | 0.0024307625 | 0.8448225674 | 0.0960662162 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.7048276795 |
| GSE13712_SHEAR | Up | 0.4771447268 |
| GSE13712_STATIC | Up | 0.8861430161 |
| GSE19018 | Up | 0.1667167324 |
| GSE19899_A1 | Down | -0.5295908785 |
| GSE19899_A2 | Down | -1.6373137476 |
| PubMed_21979375_A1 | Down | -0.6681335577 |
| PubMed_21979375_A2 | Down | -0.9928778158 |
| GSE35957 | Down | -0.4394182283 |
| GSE36640 | Down | -1.6767826902 |
| GSE54402 | Down | -1.5278540632 |
| GSE9593 | Down | -0.2862097439 |
| GSE43922 | Down | -1.3924789900 |
| GSE24585 | Down | -0.2829478593 |
| GSE37065 | Down | -0.3497708687 |
| GSE28863_A1 | Up | 2.0273337227 |
| GSE28863_A2 | Up | 1.2814063878 |
| GSE28863_A3 | Up | 0.1228997948 |
| GSE28863_A4 | Down | -0.3925892831 |
| GSE48662 | Down | -0.2706221578 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029290 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051162 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
