HCSGD entry for TMED9
1. General information
| Official gene symbol | TMED9 |
|---|---|
| Entrez ID | 54732 |
| Gene full name | transmembrane emp24 protein transport domain containing 9 |
| Other gene symbols | GMP25 HSGP25L2G p25 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IMP | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0005793 | Endoplasmic reticulum-Golgi intermediate compartment | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0007030 | Golgi organization | IMP | biological_process |
| GO:0010638 | Positive regulation of organelle organization | IMP | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0019905 | Syntaxin binding | IPI | molecular_function |
| GO:0030140 | Trans-Golgi network transport vesicle | TAS | cellular_component |
| GO:0032527 | Protein exit from endoplasmic reticulum | IMP | biological_process |
| GO:0033116 | Endoplasmic reticulum-Golgi intermediate compartment membrane | IEA | cellular_component |
| GO:0034498 | Early endosome to Golgi transport | IMP | biological_process |
| GO:0048205 | COPI coating of Golgi vesicle | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0140509175 | 0.9714295202 | 0.2939858506 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1488189804 |
| GSE13712_SHEAR | Down | -0.0112671198 |
| GSE13712_STATIC | Up | 0.1725074160 |
| GSE19018 | Up | 0.6759305908 |
| GSE19899_A1 | Up | 0.2301983201 |
| GSE19899_A2 | Up | 0.3961025649 |
| PubMed_21979375_A1 | Up | 1.9221306900 |
| PubMed_21979375_A2 | Down | -0.2250802735 |
| GSE35957 | Up | 0.1140023605 |
| GSE36640 | Up | 0.5614015536 |
| GSE54402 | Up | 0.0177251542 |
| GSE9593 | Up | 0.3400823216 |
| GSE43922 | Up | 0.5856366283 |
| GSE24585 | Down | -0.1488326256 |
| GSE37065 | Down | -0.1891460754 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.9818773868 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT023157 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-484 | MIMAT0002174 | MIRT042077 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-3p | MIMAT0000762 | MIRT042982 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049725 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
