HCSGD entry for OTUD4
1. General information
| Official gene symbol | OTUD4 |
|---|---|
| Entrez ID | 54726 |
| Gene full name | OTU domain containing 4 |
| Other gene symbols | DUBA6 HIN1 HSHIN1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004843 | Ubiquitin-specific protease activity | IDA | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0006508 | Proteolysis | IEA | biological_process |
| GO:0071108 | Protein K48-linked deubiquitination | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1205947456 | 0.8642878804 | 0.7099472825 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0403720813 |
| GSE13712_SHEAR | Up | 0.3746747776 |
| GSE13712_STATIC | Up | 0.0773780464 |
| GSE19018 | Down | -0.0662989776 |
| GSE19899_A1 | Up | 0.1871929576 |
| GSE19899_A2 | Up | 0.4738314150 |
| PubMed_21979375_A1 | Up | 1.0968943929 |
| PubMed_21979375_A2 | Up | 0.8167795934 |
| GSE35957 | Down | -0.1387973953 |
| GSE36640 | Down | -0.1090591748 |
| GSE54402 | Up | 0.1643089325 |
| GSE9593 | Down | -0.1021094640 |
| GSE43922 | Up | 0.3728477842 |
| GSE24585 | Down | -0.2946733409 |
| GSE37065 | Up | 0.2981858853 |
| GSE28863_A1 | Up | 0.2323843994 |
| GSE28863_A2 | Up | 0.1801101175 |
| GSE28863_A3 | Down | -0.0676294844 |
| GSE28863_A4 | Down | -0.2176450301 |
| GSE48662 | Down | -0.3533322063 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020209 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023436 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT024997 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-101-3p | MIMAT0000099 | MIRT027284 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028039 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031152 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040879 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
