HCSGD entry for DDX56
1. General information
| Official gene symbol | DDX56 |
|---|---|
| Entrez ID | 54606 |
| Gene full name | DEAD (Asp-Glu-Ala-Asp) box helicase 56 |
| Other gene symbols | DDX21 DDX26 NOH61 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0004004 | ATP-dependent RNA helicase activity | TAS | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005730 | Nucleolus | IDA IEA | cellular_component |
| GO:0006200 | ATP catabolic process | TAS | biological_process |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0008026 | ATP-dependent helicase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1309049086 | 0.5820326963 | 0.7348151205 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2533805297 |
| GSE13712_SHEAR | Up | 0.3830387156 |
| GSE13712_STATIC | Up | 0.0513869349 |
| GSE19018 | Down | -0.4515142890 |
| GSE19899_A1 | Down | -0.1318360959 |
| GSE19899_A2 | Up | 0.5793409500 |
| PubMed_21979375_A1 | Up | 1.3974255684 |
| PubMed_21979375_A2 | Up | 0.6184492146 |
| GSE35957 | Down | -0.3889933707 |
| GSE36640 | Up | 0.4776620923 |
| GSE54402 | Up | 0.1766176691 |
| GSE9593 | Down | -0.3194323397 |
| GSE43922 | Up | 0.1608879902 |
| GSE24585 | Down | -0.4417292601 |
| GSE37065 | Down | -0.1056075977 |
| GSE28863_A1 | Up | 0.1966430245 |
| GSE28863_A2 | Up | 0.3477921481 |
| GSE28863_A3 | Up | 0.0031104411 |
| GSE28863_A4 | Down | -0.2106175972 |
| GSE48662 | Down | -0.1929501573 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025272 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042629 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043450 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-328-3p | MIMAT0000752 | MIRT043777 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049377 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
