HCSGD entry for SPATA6
1. General information
| Official gene symbol | SPATA6 |
|---|---|
| Entrez ID | 54558 |
| Gene full name | spermatogenesis associated 6 |
| Other gene symbols | HASH SRF-1 SRF1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0007275 | Multicellular organismal development | IEA | biological_process |
| GO:0007283 | Spermatogenesis | IEA | biological_process |
| GO:0030154 | Cell differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9212693439 | 0.0150274762 | 0.9999902473 | 0.2409320950 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2465646190 |
| GSE13712_SHEAR | Down | -0.5264089592 |
| GSE13712_STATIC | Down | -0.1652907438 |
| GSE19018 | Up | 0.1714715118 |
| GSE19899_A1 | Down | -0.0172102922 |
| GSE19899_A2 | Down | -0.7387220318 |
| PubMed_21979375_A1 | Down | -0.5811576866 |
| PubMed_21979375_A2 | Down | -0.1977598618 |
| GSE35957 | Down | -0.3350984955 |
| GSE36640 | Down | -1.3387808878 |
| GSE54402 | Down | -0.6380534941 |
| GSE9593 | Down | -0.1656514934 |
| GSE43922 | Down | -1.1791055843 |
| GSE24585 | Up | 0.8951597933 |
| GSE37065 | Up | 0.1059373079 |
| GSE28863_A1 | Up | 0.4646038113 |
| GSE28863_A2 | Up | 0.0580931369 |
| GSE28863_A3 | Down | -0.3098809887 |
| GSE28863_A4 | Down | -0.2384333875 |
| GSE48662 | Down | -0.1974512115 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017397 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029215 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
