HCSGD entry for CHPF2
1. General information
| Official gene symbol | CHPF2 |
|---|---|
| Entrez ID | 54480 |
| Gene full name | chondroitin polymerizing factor 2 |
| Other gene symbols | CSGLCA-T CSGlcAT ChSy-3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016758 | Transferase activity, transferring hexosyl groups | IEA | molecular_function |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0030206 | Chondroitin sulfate biosynthetic process | TAS | biological_process |
| GO:0032580 | Golgi cisterna membrane | IEA | cellular_component |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0050510 | N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0061797576 | 0.7891007674 | 0.2080363171 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6944616213 |
| GSE13712_SHEAR | Down | -0.1402055183 |
| GSE13712_STATIC | Down | -0.0830441182 |
| GSE19018 | Up | 0.3861612242 |
| GSE19899_A1 | Up | 0.1799617440 |
| GSE19899_A2 | Up | 1.1755018271 |
| PubMed_21979375_A1 | Down | -0.5278379187 |
| PubMed_21979375_A2 | Up | 1.4178046373 |
| GSE35957 | Down | -0.1072076814 |
| GSE36640 | Up | 1.5165793349 |
| GSE54402 | Up | 0.4386102553 |
| GSE9593 | Up | 0.5434047345 |
| GSE43922 | Up | 0.2410097044 |
| GSE24585 | Up | 0.2271592329 |
| GSE37065 | Down | -0.1136889741 |
| GSE28863_A1 | Up | 0.4130114282 |
| GSE28863_A2 | Up | 0.8501998067 |
| GSE28863_A3 | Down | -0.8922501023 |
| GSE28863_A4 | Down | -0.3588909842 |
| GSE48662 | Up | 0.2956605163 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT005223 | pSILAC//Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027616 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-671-3p | MIMAT0004819 | MIRT037777 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-766-3p | MIMAT0003888 | MIRT039052 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-671-5p | MIMAT0003880 | MIRT039288 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041558 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-339-5p | MIMAT0000764 | MIRT042782 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125b-5p | MIMAT0000423 | MIRT045967 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10b-5p | MIMAT0000254 | MIRT047492 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
