HCSGD entry for GAR1
1. General information
| Official gene symbol | GAR1 |
|---|---|
| Entrez ID | 54433 |
| Gene full name | GAR1 ribonucleoprotein homolog (yeast) |
| Other gene symbols | NOLA1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001522 | Pseudouridine synthesis | IEA | biological_process |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005261 | Cation channel activity | TAS | molecular_function |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0006810 | Transport | TAS | biological_process |
| GO:0006812 | Cation transport | TAS | biological_process |
| GO:0015030 | Cajal body | IEA | cellular_component |
| GO:0031429 | Box H/ACA snoRNP complex | IEA | cellular_component |
| GO:0034220 | Ion transmembrane transport | TAS | biological_process |
| GO:0055085 | Transmembrane transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9495109190 | 0.0211708522 | 0.9999902473 | 0.2814333333 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3313876018 |
| GSE13712_SHEAR | Up | 0.1187860154 |
| GSE13712_STATIC | Up | 0.1171214748 |
| GSE19018 | Down | -1.6566875483 |
| GSE19899_A1 | Down | -0.4119283374 |
| GSE19899_A2 | Down | -0.2942740995 |
| PubMed_21979375_A1 | Down | -0.3005612602 |
| PubMed_21979375_A2 | Down | -0.3050893871 |
| GSE35957 | Down | -0.5644563649 |
| GSE36640 | Down | -0.7227866351 |
| GSE54402 | Up | 0.2902254057 |
| GSE9593 | Down | -0.3355595793 |
| GSE43922 | Up | 0.0435132774 |
| GSE24585 | Down | -0.4209258508 |
| GSE37065 | Down | -0.2359202473 |
| GSE28863_A1 | Down | -0.0773087119 |
| GSE28863_A2 | Down | -0.2325237734 |
| GSE28863_A3 | Up | 0.1125493741 |
| GSE28863_A4 | Down | -0.0426169473 |
| GSE48662 | Down | -0.1378825418 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020680 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022924 | Proteomics;Microarray | Non-Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
