HCSGD entry for C9orf78
1. General information
| Official gene symbol | C9orf78 |
|---|---|
| Entrez ID | 51759 |
| Gene full name | chromosome 9 open reading frame 78 |
| Other gene symbols | HCA59 HSPC220 bA409K20.3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0186408837 | 0.9527894153 | 0.3339735374 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.5106115841 |
| GSE13712_SHEAR | Down | -0.2511069447 |
| GSE13712_STATIC | Down | -0.0581637196 |
| GSE19018 | Down | -0.2939457598 |
| GSE19899_A1 | Up | 0.7704198828 |
| GSE19899_A2 | Up | 0.9082772849 |
| PubMed_21979375_A1 | Up | 0.4387131695 |
| PubMed_21979375_A2 | Up | 1.2063448402 |
| GSE35957 | Down | -0.1144473352 |
| GSE36640 | Up | 0.3651587402 |
| GSE54402 | Up | 0.4800332999 |
| GSE9593 | Up | 0.0882519076 |
| GSE43922 | Up | 0.5185583841 |
| GSE24585 | Down | -0.0340931608 |
| GSE37065 | Up | 0.0938261630 |
| GSE28863_A1 | Down | -0.1705717891 |
| GSE28863_A2 | Down | -0.1119337886 |
| GSE28863_A3 | Down | -0.1442975278 |
| GSE28863_A4 | Up | 0.3579638127 |
| GSE48662 | Up | 0.2749793542 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | MIRT002548 | Microarray//Microarray;Other | Functional MTI (Weak) | 15685193 |
| hsa-miR-1296-5p | MIMAT0005794 | MIRT036099 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040429 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050599 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | NA | hsa-miR-373 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
