HCSGD entry for RAB23
1. General information
| Official gene symbol | RAB23 |
|---|---|
| Entrez ID | 51715 |
| Gene full name | RAB23, member RAS oncogene family |
| Other gene symbols | HSPC137 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000045 | Autophagic vacuole assembly | IMP | biological_process |
| GO:0003924 | GTPase activity | IDA | molecular_function |
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005776 | Autophagic vacuole | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0006184 | GTP catabolic process | IDA | biological_process |
| GO:0006968 | Cellular defense response | IMP | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0008589 | Regulation of smoothened signaling pathway | IEA | biological_process |
| GO:0010008 | Endosome membrane | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0021513 | Spinal cord dorsal/ventral patterning | IEA | biological_process |
| GO:0030670 | Phagocytic vesicle membrane | IEA | cellular_component |
| GO:0042733 | Embryonic digit morphogenesis | IEA | biological_process |
| GO:0042992 | Negative regulation of transcription factor import into nucleus | IMP | biological_process |
| GO:0045335 | Phagocytic vesicle | IDA | cellular_component |
| GO:0045861 | Negative regulation of proteolysis | IEA | biological_process |
| GO:0097094 | Craniofacial suture morphogenesis | IMP | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9028409331 | 0.0019883249 | 0.9999902473 | 0.0850970732 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.5278111012 |
| GSE13712_SHEAR | Up | 0.2931191887 |
| GSE13712_STATIC | Up | 0.3125754483 |
| GSE19018 | Down | -0.6764977676 |
| GSE19899_A1 | Down | -1.4749756102 |
| GSE19899_A2 | Down | -1.5385669658 |
| PubMed_21979375_A1 | Down | -1.3267398862 |
| PubMed_21979375_A2 | Down | -1.9457975335 |
| GSE35957 | Up | 0.1665409154 |
| GSE36640 | Up | 0.0719162515 |
| GSE54402 | Down | -1.2561697709 |
| GSE9593 | Up | 0.3397961193 |
| GSE43922 | Down | -1.0088049550 |
| GSE24585 | Up | 0.5169984232 |
| GSE37065 | Down | -0.0119945306 |
| GSE28863_A1 | Up | 0.3079906138 |
| GSE28863_A2 | Up | 0.0090893647 |
| GSE28863_A3 | Down | -0.8254775646 |
| GSE28863_A4 | Down | -0.1215011156 |
| GSE48662 | Down | -0.7770627887 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001513 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024924 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026693 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027149 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029882 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-18a-5p | MIMAT0000072 | MIRT031315 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031846 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040385 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050809 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
