HCSGD entry for VPS29
1. General information
| Official gene symbol | VPS29 |
|---|---|
| Entrez ID | 51699 |
| Gene full name | vacuolar protein sorting 29 homolog (S. cerevisiae) |
| Other gene symbols | DC15 PEP11 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004647 | Phosphoserine phosphatase activity | IEA | molecular_function |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0010008 | Endosome membrane | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016788 | Hydrolase activity, acting on ester bonds | IEA | molecular_function |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7980498727 | 0.2233462292 | 0.9999902473 | 0.9091461265 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0497579533 |
| GSE13712_SHEAR | Up | 0.0748093270 |
| GSE13712_STATIC | Down | -0.0027628112 |
| GSE19018 | Up | 0.1977578140 |
| GSE19899_A1 | Down | -0.1607829499 |
| GSE19899_A2 | Down | -0.0572389140 |
| PubMed_21979375_A1 | Down | -0.1874691329 |
| PubMed_21979375_A2 | Down | -0.2341451443 |
| GSE35957 | Down | -0.0674256706 |
| GSE36640 | Up | 0.0271120519 |
| GSE54402 | Down | -0.0045011048 |
| GSE9593 | Up | 0.1216393320 |
| GSE43922 | Down | -0.3275139899 |
| GSE24585 | Up | 0.2133656103 |
| GSE37065 | Up | 0.0191554105 |
| GSE28863_A1 | Up | 0.1093023995 |
| GSE28863_A2 | Down | -0.0384068373 |
| GSE28863_A3 | Down | -0.5181149316 |
| GSE28863_A4 | Up | 0.2306879081 |
| GSE48662 | Down | -0.7661914994 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-708-5p | MIMAT0004926 | MIRT037751 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
