HCSGD entry for LSM7
1. General information
| Official gene symbol | LSM7 |
|---|---|
| Entrez ID | 51690 |
| Gene full name | LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
| Other gene symbols | YNL147W |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000288 | Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005681 | Spliceosomal complex | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0017070 | U6 snRNA binding | NAS | molecular_function |
| GO:0043928 | Exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9190096197 | 0.0115073098 | 0.9999902473 | 0.2125289510 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4639749034 |
| GSE13712_SHEAR | Down | -0.1548185994 |
| GSE13712_STATIC | Down | -0.0327955205 |
| GSE19018 | Down | -0.1595517365 |
| GSE19899_A1 | Down | -0.4595305674 |
| GSE19899_A2 | Up | 0.2998878922 |
| PubMed_21979375_A1 | Up | 0.2895733403 |
| PubMed_21979375_A2 | Down | -0.1909069940 |
| GSE35957 | Down | -0.7723432916 |
| GSE36640 | Down | -0.7464546826 |
| GSE54402 | Up | 0.1863359086 |
| GSE9593 | Down | -0.5573343890 |
| GSE43922 | Up | 0.0488658687 |
| GSE24585 | Down | -0.6600078223 |
| GSE37065 | Down | -0.3745325653 |
| GSE28863_A1 | Down | -0.7903342912 |
| GSE28863_A2 | Down | -0.4816499528 |
| GSE28863_A3 | Down | -0.1407745449 |
| GSE28863_A4 | Down | -0.0498341178 |
| GSE48662 | Down | -0.0910257038 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049616 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
