HCSGD entry for GDE1
1. General information
| Official gene symbol | GDE1 |
|---|---|
| Entrez ID | 51573 |
| Gene full name | glycerophosphodiester phosphodiesterase 1 |
| Other gene symbols | 363E6.2 MIR16 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006071 | Glycerol metabolic process | IEA | biological_process |
| GO:0006629 | Lipid metabolic process | IEA TAS | biological_process |
| GO:0008889 | Glycerophosphodiester phosphodiesterase activity | IEA TAS | molecular_function |
| GO:0016021 | Integral component of membrane | TAS | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0047395 | Glycerophosphoinositol glycerophosphodiesterase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0084805744 | 0.9713689449 | 0.2370178270 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.8896925138 |
| GSE13712_SHEAR | Down | -0.1520044406 |
| GSE13712_STATIC | Down | -0.0099152080 |
| GSE19018 | Up | 0.2550496093 |
| GSE19899_A1 | Up | 0.5895158266 |
| GSE19899_A2 | Up | 0.5751549577 |
| PubMed_21979375_A1 | Up | 0.3942797952 |
| PubMed_21979375_A2 | Up | 0.7617074712 |
| GSE35957 | Up | 0.3084983923 |
| GSE36640 | Up | 1.3425614153 |
| GSE54402 | Up | 0.0764482455 |
| GSE9593 | Up | 0.6672962780 |
| GSE43922 | Up | 0.3540078263 |
| GSE24585 | Down | -0.3249922009 |
| GSE37065 | Up | 0.2292191233 |
| GSE28863_A1 | Up | 0.0599093990 |
| GSE28863_A2 | Up | 0.4385582177 |
| GSE28863_A3 | Down | -0.5086960711 |
| GSE28863_A4 | Up | 0.1331774001 |
| GSE48662 | Down | -0.1440010782 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT005236 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025463 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029380 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-3p | MIMAT0004500 | MIRT038954 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040131 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-378a-5p | MIMAT0000731 | MIRT043986 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048524 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048644 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
