HCSGD entry for VPS54
1. General information
| Official gene symbol | VPS54 |
|---|---|
| Entrez ID | 51542 |
| Gene full name | vacuolar protein sorting 54 homolog (S. cerevisiae) |
| Other gene symbols | HCC8 SLP-8p VPS54L WR hVps54L |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000938 | GARP complex | IDA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0040007 | Growth | IEA | biological_process |
| GO:0042147 | Retrograde transport, endosome to Golgi | IEA | biological_process |
| GO:0048873 | Homeostasis of number of cells within a tissue | IEA | biological_process |
| GO:0050881 | Musculoskeletal movement | IEA | biological_process |
| GO:0060052 | Neurofilament cytoskeleton organization | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8070322480 | 0.0886648342 | 0.9999902473 | 0.5649334221 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3904542155 |
| GSE13712_SHEAR | Down | -0.0345268825 |
| GSE13712_STATIC | Down | -0.0004402384 |
| GSE19018 | Down | -0.2331876835 |
| GSE19899_A1 | Up | 0.0278808341 |
| GSE19899_A2 | Up | 0.0783162845 |
| PubMed_21979375_A1 | Up | 0.1843451127 |
| PubMed_21979375_A2 | Down | -0.1027524806 |
| GSE35957 | Up | 0.0029073162 |
| GSE36640 | Down | -0.4218489704 |
| GSE54402 | Up | 0.2902102955 |
| GSE9593 | Down | -0.4284682467 |
| GSE43922 | Up | 0.0553307323 |
| GSE24585 | Down | -0.2207922172 |
| GSE37065 | Up | 0.1275216561 |
| GSE28863_A1 | Up | 0.3073553451 |
| GSE28863_A2 | Up | 0.6117058780 |
| GSE28863_A3 | Down | -0.9173919205 |
| GSE28863_A4 | Down | -0.2435655711 |
| GSE48662 | Down | -0.3634838643 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027414 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028839 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030672 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT037142 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
