HCSGD entry for SUCO
1. General information
| Official gene symbol | SUCO |
|---|---|
| Entrez ID | 51430 |
| Gene full name | SUN domain containing ossification factor |
| Other gene symbols | C1orf9 CH1 OPT SLP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001503 | Ossification | IEA | biological_process |
| GO:0005791 | Rough endoplasmic reticulum | ISS | cellular_component |
| GO:0007275 | Multicellular organismal development | IEA | biological_process |
| GO:0016020 | Membrane | ISS | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030867 | Rough endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0032967 | Positive regulation of collagen biosynthetic process | ISS | biological_process |
| GO:0045669 | Positive regulation of osteoblast differentiation | ISS | biological_process |
| GO:0046850 | Regulation of bone remodeling | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2551734661 | 0.5623799894 | 0.9466414094 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2200712572 |
| GSE13712_SHEAR | Down | -0.0958928194 |
| GSE13712_STATIC | Up | 0.0723645182 |
| GSE19018 | Up | 0.0523882614 |
| GSE19899_A1 | Up | 0.1472213924 |
| GSE19899_A2 | Down | -0.3953881361 |
| PubMed_21979375_A1 | Up | 0.1823814411 |
| PubMed_21979375_A2 | Down | -0.1584786466 |
| GSE35957 | Up | 0.0932048578 |
| GSE36640 | Up | 0.5461657350 |
| GSE54402 | Down | -0.1216306773 |
| GSE9593 | Up | 0.0313341737 |
| GSE43922 | Up | 0.0472786018 |
| GSE24585 | Up | 0.3036578168 |
| GSE37065 | Up | 0.3441911386 |
| GSE28863_A1 | Up | 0.1048364631 |
| GSE28863_A2 | Up | 0.5867103780 |
| GSE28863_A3 | Down | -0.6444188432 |
| GSE28863_A4 | Down | -0.2397592632 |
| GSE48662 | Down | -0.2640199010 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-93-5p | MIMAT0000093 | MIRT027954 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028864 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-484 | MIMAT0002174 | MIRT042332 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
