HCSGD entry for CDC40
1. General information
| Official gene symbol | CDC40 |
|---|---|
| Entrez ID | 51362 |
| Gene full name | cell division cycle 40 |
| Other gene symbols | EHB3 PRP17 PRPF17 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | TAS | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0006369 | Termination of RNA polymerase II transcription | TAS | biological_process |
| GO:0006406 | MRNA export from nucleus | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0031124 | MRNA 3'-end processing | TAS | biological_process |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1995632309 | 0.9063436078 | 0.8620882652 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1769605753 |
| GSE13712_SHEAR | Down | -0.0211392498 |
| GSE13712_STATIC | Down | -0.0924897985 |
| GSE19018 | Up | 0.0395796054 |
| GSE19899_A1 | Up | 0.0198170558 |
| GSE19899_A2 | Up | 0.1182322620 |
| PubMed_21979375_A1 | Up | 0.7184512858 |
| PubMed_21979375_A2 | Up | 0.1377223981 |
| GSE35957 | Up | 0.0728789493 |
| GSE36640 | Down | -0.3761049065 |
| GSE54402 | Up | 0.0830785246 |
| GSE9593 | Up | 0.1341596270 |
| GSE43922 | Up | 0.0129939278 |
| GSE24585 | Up | 0.2352100368 |
| GSE37065 | Up | 0.2087198569 |
| GSE28863_A1 | Up | 0.3224015200 |
| GSE28863_A2 | Up | 0.5352121031 |
| GSE28863_A3 | Down | -0.3125341870 |
| GSE28863_A4 | Down | -0.0937854837 |
| GSE48662 | Down | -0.0070986944 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020923 | Reporter assay;Other | Non-Functional MTI | 20584899 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
