HCSGD entry for CRNKL1
1. General information
| Official gene symbol | CRNKL1 |
|---|---|
| Entrez ID | 51340 |
| Gene full name | crooked neck pre-mRNA splicing factor-like 1 (Drosophila) |
| Other gene symbols | CLF CRN Clf1 HCRN MSTP021 SYF3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000245 | Spliceosomal complex assembly | IDA | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IC | biological_process |
| GO:0003723 | RNA binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005681 | Spliceosomal complex | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006396 | RNA processing | IEA | biological_process |
| GO:0016607 | Nuclear speck | IEA | cellular_component |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9154948862 | 0.0280736408 | 0.9999902473 | 0.3187775237 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1878999428 |
| GSE13712_SHEAR | Down | -0.3172154481 |
| GSE13712_STATIC | Down | -0.1613635091 |
| GSE19018 | Down | -1.1420771542 |
| GSE19899_A1 | Down | -0.6738397341 |
| GSE19899_A2 | Down | -0.7234881527 |
| PubMed_21979375_A1 | Down | -0.0037619884 |
| PubMed_21979375_A2 | Down | -0.4539289853 |
| GSE35957 | Down | -0.3119431253 |
| GSE36640 | Down | -0.5632988801 |
| GSE54402 | Down | -0.2239937981 |
| GSE9593 | Down | -0.2664106674 |
| GSE43922 | Up | 0.0552651429 |
| GSE24585 | Up | 0.2227191590 |
| GSE37065 | Up | 0.0348918517 |
| GSE28863_A1 | Up | 0.4523203630 |
| GSE28863_A2 | Up | 0.3754129810 |
| GSE28863_A3 | Down | -0.0164253375 |
| GSE28863_A4 | Up | 0.0372972531 |
| GSE48662 | Down | -0.3684179115 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-186-5p | MIMAT0000456 | MIRT045227 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
