HCSGD entry for FAM13B
1. General information
| Official gene symbol | FAM13B |
|---|---|
| Entrez ID | 51306 |
| Gene full name | family with sequence similarity 13, member B |
| Other gene symbols | ARHGAP49 C5orf5 FAM13B1 KHCHP N61 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005096 | GTPase activator activity | IEA | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0007165 | Signal transduction | IEA | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | TAS | biological_process |
| GO:0051056 | Regulation of small GTPase mediated signal transduction | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1953299039 | 0.0120281942 | 0.8562230270 | 0.2164006152 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2152440356 |
| GSE13712_SHEAR | Up | 0.1587801697 |
| GSE13712_STATIC | Up | 0.3071138747 |
| GSE19018 | Down | -1.5180406779 |
| GSE19899_A1 | Down | -1.6842674446 |
| GSE19899_A2 | Down | -0.5371865896 |
| PubMed_21979375_A1 | Down | -0.7817077754 |
| PubMed_21979375_A2 | Down | -0.7390814905 |
| GSE35957 | Up | 0.7334084849 |
| GSE36640 | Up | 0.6865398077 |
| GSE54402 | Down | -0.6820703989 |
| GSE9593 | Up | 1.0710398303 |
| GSE43922 | Down | -0.2724566313 |
| GSE24585 | Up | 0.6316878311 |
| GSE37065 | Up | 0.1410291492 |
| GSE28863_A1 | Down | -0.3386691639 |
| GSE28863_A2 | Down | -0.0319437193 |
| GSE28863_A3 | Down | -0.4253097402 |
| GSE28863_A4 | Down | -0.3739305437 |
| GSE48662 | Up | 0.4471945316 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | MIRT004468 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-218-5p | MIMAT0000275 | MIRT024238 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | NA | hsa-miR-373 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
