HCSGD entry for PCDH12
1. General information
| Official gene symbol | PCDH12 |
|---|---|
| Entrez ID | 51294 |
| Gene full name | protocadherin 12 |
| Other gene symbols | VE-cadherin-2 VECAD2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0005911 | Cell-cell junction | IEA | cellular_component |
| GO:0005977 | Glycogen metabolic process | IEA | biological_process |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0008038 | Neuron recognition | TAS | biological_process |
| GO:0016339 | Calcium-dependent cell-cell adhesion | IEA | biological_process |
| GO:0060711 | Labyrinthine layer development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3574139698 | 0.4904617492 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1295498461 |
| GSE13712_SHEAR | Down | -0.3014871461 |
| GSE13712_STATIC | Down | -0.6897639870 |
| GSE19018 | Up | 0.1653572436 |
| GSE19899_A1 | Up | 0.0732905125 |
| GSE19899_A2 | Up | 0.5340790409 |
| PubMed_21979375_A1 | Up | 0.3257459535 |
| PubMed_21979375_A2 | Up | 0.0699376640 |
| GSE35957 | Up | 0.5709115693 |
| GSE36640 | Down | -0.0419211773 |
| GSE54402 | Up | 0.2492583869 |
| GSE9593 | Down | -0.1854832524 |
| GSE43922 | Up | 0.0872879951 |
| GSE24585 | Up | 0.0110185351 |
| GSE37065 | Up | 0.0242755272 |
| GSE28863_A1 | Down | -0.0564732704 |
| GSE28863_A2 | Down | -0.2906703806 |
| GSE28863_A3 | Up | 0.0576617105 |
| GSE28863_A4 | Down | -0.1489169543 |
| GSE48662 | Down | -0.0467196055 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
