HCSGD entry for PIPOX
1. General information
| Official gene symbol | PIPOX |
|---|---|
| Entrez ID | 51268 |
| Gene full name | pipecolic acid oxidase |
| Other gene symbols | LPIPOX |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005102 | Receptor binding | IPI | molecular_function |
| GO:0005777 | Peroxisome | IDA IEA | cellular_component |
| GO:0008115 | Sarcosine oxidase activity | IDA | molecular_function |
| GO:0016491 | Oxidoreductase activity | IEA | molecular_function |
| GO:0033514 | L-lysine catabolic process to acetyl-CoA via L-pipecolate | IDA | biological_process |
| GO:0046653 | Tetrahydrofolate metabolic process | IEA | biological_process |
| GO:0050031 | L-pipecolate oxidase activity | IDA NAS | molecular_function |
| GO:0055114 | Oxidation-reduction process | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1567858858 | 0.8894267581 | 0.7860497714 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2088931229 |
| GSE13712_SHEAR | Up | 0.0735430155 |
| GSE13712_STATIC | Up | 0.1295738958 |
| GSE19018 | Up | 0.1054428946 |
| GSE19899_A1 | Up | 0.3612082877 |
| GSE19899_A2 | Up | 0.3322270303 |
| PubMed_21979375_A1 | Down | -0.1457753717 |
| PubMed_21979375_A2 | Down | -0.1908739072 |
| GSE35957 | Up | 0.0615496313 |
| GSE36640 | Up | 0.4504862969 |
| GSE54402 | Down | -0.3435954496 |
| GSE9593 | Up | 0.2652231736 |
| GSE43922 | Up | 0.0445550926 |
| GSE24585 | Up | 0.2724620846 |
| GSE37065 | Down | -0.0296716912 |
| GSE28863_A1 | Down | -0.0587228910 |
| GSE28863_A2 | Down | -0.1137983569 |
| GSE28863_A3 | Up | 0.2415217597 |
| GSE28863_A4 | Down | -0.0392910445 |
| GSE48662 | Up | 0.2645315789 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| Glycine | DB00145 | NUTR00028 |
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-197-3p | MIMAT0000227 | MIRT003818 | Microarray | Functional MTI (Weak) | 16822819 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
