HCSGD entry for NIN
1. General information
| Official gene symbol | NIN |
|---|---|
| Entrez ID | 51199 |
| Gene full name | ninein (GSK3B interacting protein) |
| Other gene symbols | SCKL7 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005813 | Centrosome | IDA | cellular_component |
| GO:0005814 | Centriole | IEA | cellular_component |
| GO:0005874 | Microtubule | IEA | cellular_component |
| GO:0034454 | Microtubule anchoring at centrosome | IEA | biological_process |
| GO:0051642 | Centrosome localization | TAS | biological_process |
| GO:0090222 | Centrosome-templated microtubule nucleation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1327632309 | 0.6687049124 | 0.7378309835 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0190498004 |
| GSE13712_SHEAR | Up | 0.1474814809 |
| GSE13712_STATIC | Up | 0.0255241108 |
| GSE19018 | Down | -0.1087123261 |
| GSE19899_A1 | Up | 0.0652896073 |
| GSE19899_A2 | Up | 0.3147759005 |
| PubMed_21979375_A1 | Up | 0.0749806117 |
| PubMed_21979375_A2 | Up | 0.4660158754 |
| GSE35957 | Down | -0.1655364928 |
| GSE36640 | Down | -0.8628320443 |
| GSE54402 | Up | 0.7493828261 |
| GSE9593 | Down | -0.1961475951 |
| GSE43922 | Up | 0.0034260649 |
| GSE24585 | Down | -0.4101700830 |
| GSE37065 | Down | -0.0468790062 |
| GSE28863_A1 | Up | 0.6962204598 |
| GSE28863_A2 | Up | 0.7368272617 |
| GSE28863_A3 | Up | 0.2035213684 |
| GSE28863_A4 | Up | 0.1740270454 |
| GSE48662 | Down | -0.2126105617 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | MIRT002535 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019292 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-375 | MIMAT0000728 | MIRT019688 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020128 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-9-5p | MIMAT0000441 | MIRT021379 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026146 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027004 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT027981 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030668 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031443 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040789 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125a-5p | MIMAT0000443 | MIRT045738 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | NA | hsa-miR-373 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
