HCSGD entry for VPS28
1. General information
| Official gene symbol | VPS28 |
|---|---|
| Entrez ID | 51160 |
| Gene full name | vacuolar protein sorting 28 homolog (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000813 | ESCRT I complex | IDA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0005829 | Cytosol | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0010008 | Endosome membrane | TAS | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016197 | Endosomal transport | TAS | biological_process |
| GO:0019068 | Virion assembly | TAS | biological_process |
| GO:0019082 | Viral protein processing | TAS | biological_process |
| GO:0031397 | Negative regulation of protein ubiquitination | IDA | biological_process |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
| GO:0043162 | Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | IMP | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6296041146 | 0.2134352912 | 0.9999902473 | 0.8922153565 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1678948192 |
| GSE13712_SHEAR | Down | -0.3731055764 |
| GSE13712_STATIC | Down | -0.3143976739 |
| GSE19018 | Up | 0.4648260441 |
| GSE19899_A1 | Down | -0.3711098635 |
| GSE19899_A2 | Down | -0.0395320369 |
| PubMed_21979375_A1 | Up | 1.6669630467 |
| PubMed_21979375_A2 | Up | 0.0667931886 |
| GSE35957 | Down | -0.1056771545 |
| GSE36640 | Up | 0.3835408883 |
| GSE54402 | Up | 0.4243160221 |
| GSE9593 | Down | -0.0600959322 |
| GSE43922 | Down | -0.0157786834 |
| GSE24585 | Down | -0.2165486511 |
| GSE37065 | Down | -0.1400330868 |
| GSE28863_A1 | Down | -0.0970075309 |
| GSE28863_A2 | Down | -0.2278398767 |
| GSE28863_A3 | Up | 0.0125908829 |
| GSE28863_A4 | Down | -0.0332457924 |
| GSE48662 | Down | -0.0882829603 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-328-3p | MIMAT0000752 | MIRT043761 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052309 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
