HCSGD entry for TRNT1
1. General information
| Official gene symbol | TRNT1 |
|---|---|
| Entrez ID | 51095 |
| Gene full name | tRNA nucleotidyl transferase, CCA-adding, 1 |
| Other gene symbols | CCA1 MtCCA |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000049 | TRNA binding | IDA | molecular_function |
| GO:0001680 | TRNA 3'-terminal CCA addition | IEA | biological_process |
| GO:0004810 | TRNA adenylyltransferase activity | IDA | molecular_function |
| GO:0005524 | ATP binding | TAS | molecular_function |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0005813 | Centrosome | IDA | cellular_component |
| GO:0006626 | Protein targeting to mitochondrion | TAS | biological_process |
| GO:0009022 | TRNA nucleotidyltransferase activity | IEA | molecular_function |
| GO:0042780 | TRNA 3'-end processing | IDA IEA | biological_process |
| GO:0052927 | CTP:tRNA cytidylyltransferase activity | IEA | molecular_function |
| GO:0052928 | CTP:3'-cytidine-tRNA cytidylyltransferase activity | IEA | molecular_function |
| GO:0052929 | ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9115782949 | 0.0547564036 | 0.9999902473 | 0.4412869871 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2661457601 |
| GSE13712_SHEAR | Up | 0.0782625519 |
| GSE13712_STATIC | Up | 0.0830142725 |
| GSE19018 | Down | -1.3239363649 |
| GSE19899_A1 | Down | -0.1545216616 |
| GSE19899_A2 | Down | -0.2087468474 |
| PubMed_21979375_A1 | Up | 0.2751277886 |
| PubMed_21979375_A2 | Down | -0.8836434847 |
| GSE35957 | Down | -0.1126152358 |
| GSE36640 | Down | -0.1135479535 |
| GSE54402 | Up | 0.2001690402 |
| GSE9593 | Down | -0.1619086556 |
| GSE43922 | Down | -0.0147598663 |
| GSE24585 | Down | -0.4473039496 |
| GSE37065 | Down | -0.0483294431 |
| GSE28863_A1 | Up | 0.0908860492 |
| GSE28863_A2 | Up | 0.0904336355 |
| GSE28863_A3 | Down | -0.2779000486 |
| GSE28863_A4 | Down | -0.1815129265 |
| GSE48662 | Down | -0.2425678516 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT032454 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
