HCSGD entry for PCDH9
1. General information
| Official gene symbol | PCDH9 |
|---|---|
| Entrez ID | 5101 |
| Gene full name | protocadherin 9 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030900 | Forebrain development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0015936211 | 0.0440899206 | 0.1071196429 | 0.3948590677 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4903202439 |
| GSE13712_SHEAR | Up | 0.1830640887 |
| GSE13712_STATIC | Down | -0.2599914539 |
| GSE19018 | Down | -0.4475156493 |
| GSE19899_A1 | Up | 0.8017871437 |
| GSE19899_A2 | Up | 1.5752350002 |
| PubMed_21979375_A1 | Up | 1.1100214044 |
| PubMed_21979375_A2 | Up | 1.6431116705 |
| GSE35957 | Up | 0.3956946426 |
| GSE36640 | Up | 3.3487727063 |
| GSE54402 | Up | 1.6623408710 |
| GSE9593 | Up | 0.6846909186 |
| GSE43922 | Up | 1.5892351875 |
| GSE24585 | Down | -0.5732323703 |
| GSE37065 | Up | 0.2774665188 |
| GSE28863_A1 | Down | -0.3003397995 |
| GSE28863_A2 | Down | -1.8150620938 |
| GSE28863_A3 | Down | -1.5331087173 |
| GSE28863_A4 | Up | 0.0806479381 |
| GSE48662 | Down | -0.1123758249 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020565 | Reporter assay;Other | Functional MTI | 20584899 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
