HCSGD entry for COL5A3
1. General information
| Official gene symbol | COL5A3 |
|---|---|
| Entrez ID | 50509 |
| Gene full name | collagen, type V, alpha 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005201 | Extracellular matrix structural constituent | NAS | molecular_function |
| GO:0005518 | Collagen binding | NAS | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005588 | Collagen type V | NAS | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007160 | Cell-matrix adhesion | IEA | biological_process |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0008201 | Heparin binding | IEA | molecular_function |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030199 | Collagen fibril organization | NAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0043394 | Proteoglycan binding | IEA | molecular_function |
| GO:0043588 | Skin development | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3316427947 | 0.0637119372 | 0.9999902473 | 0.4758768445 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0441215623 |
| GSE13712_SHEAR | Down | -0.1083255334 |
| GSE13712_STATIC | Down | -0.1590374705 |
| GSE19018 | Down | -0.6942343345 |
| GSE19899_A1 | Up | 0.0646620187 |
| GSE19899_A2 | Down | -0.3545980070 |
| PubMed_21979375_A1 | Up | 1.3715874495 |
| PubMed_21979375_A2 | Up | 0.9571718539 |
| GSE35957 | Down | -0.6655432342 |
| GSE36640 | Down | -3.2506974814 |
| GSE54402 | Down | -0.1319779845 |
| GSE9593 | Down | -0.5262740568 |
| GSE43922 | Up | 0.1743119593 |
| GSE24585 | Up | 0.0595475852 |
| GSE37065 | Down | -0.3010102135 |
| GSE28863_A1 | Down | -0.1042814325 |
| GSE28863_A2 | Up | 0.0722253669 |
| GSE28863_A3 | Up | 0.5987288112 |
| GSE28863_A4 | Up | 0.0472865277 |
| GSE48662 | Up | 0.0381401473 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-29b-3p | MIMAT0000100 | MIRT000098 | Luciferase reporter assay | Functional MTI | 23478036 |
| hsa-miR-204-5p | MIMAT0000265 | MIRT005822 | Microarray | Functional MTI (Weak) | 21282569 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
