HCSGD entry for SMARCAL1
1. General information
| Official gene symbol | SMARCAL1 |
|---|---|
| Entrez ID | 50485 |
| Gene full name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 |
| Other gene symbols | HARP HHARP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000733 | DNA strand renaturation | IDA IMP | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0004386 | Helicase activity | IEA | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0006200 | ATP catabolic process | IMP | biological_process |
| GO:0006259 | DNA metabolic process | IMP | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | IMP | biological_process |
| GO:0008094 | DNA-dependent ATPase activity | IEA IMP | molecular_function |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0036310 | Annealing helicase activity | IDA IMP | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5338395084 | 0.2942908438 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2174927713 |
| GSE13712_SHEAR | Up | 0.0255001103 |
| GSE13712_STATIC | Down | -0.0446051971 |
| GSE19018 | Up | 0.3737269093 |
| GSE19899_A1 | Down | -0.1064672749 |
| GSE19899_A2 | Up | 0.3840227000 |
| PubMed_21979375_A1 | Up | 0.4711010097 |
| PubMed_21979375_A2 | Up | 0.3580268321 |
| GSE35957 | Down | -0.0015327605 |
| GSE36640 | Down | -0.0269795227 |
| GSE54402 | Down | -0.0743367793 |
| GSE9593 | Up | 0.2094083145 |
| GSE43922 | Up | 0.0350094720 |
| GSE24585 | Down | -0.1828780654 |
| GSE37065 | Down | -0.0231649008 |
| GSE28863_A1 | Down | -0.0462212530 |
| GSE28863_A2 | Up | 0.1096705373 |
| GSE28863_A3 | Down | -1.0327398808 |
| GSE28863_A4 | Down | -0.2707438326 |
| GSE48662 | Up | 0.2246702180 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-296-3p | MIMAT0004679 | MIRT038478 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
