HCSGD entry for NID1
1. General information
| Official gene symbol | NID1 |
|---|---|
| Entrez ID | 4811 |
| Gene full name | nidogen 1 |
| Other gene symbols | NID |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005518 | Collagen binding | IEA | molecular_function |
| GO:0005605 | Basal lamina | IEA | cellular_component |
| GO:0007160 | Cell-matrix adhesion | IEA | biological_process |
| GO:0010811 | Positive regulation of cell-substrate adhesion | IEA | biological_process |
| GO:0031012 | Extracellular matrix | IDA ISS | cellular_component |
| GO:0032836 | Glomerular basement membrane development | IEA | biological_process |
| GO:0043237 | Laminin-1 binding | IEA | molecular_function |
| GO:0071944 | Cell periphery | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9726839710 | 0.0016538923 | 0.9999902473 | 0.0782951439 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.6738787963 |
| GSE13712_SHEAR | Down | -0.8623572492 |
| GSE13712_STATIC | Down | -0.7941317979 |
| GSE19018 | Down | -0.0532035904 |
| GSE19899_A1 | Down | -0.3443837540 |
| GSE19899_A2 | Down | -1.2697713845 |
| PubMed_21979375_A1 | Down | -1.2818788236 |
| PubMed_21979375_A2 | Down | -1.2114436048 |
| GSE35957 | Down | -0.6050834751 |
| GSE36640 | Down | -0.9543642753 |
| GSE54402 | Down | -0.8010611915 |
| GSE9593 | Up | 0.2821580949 |
| GSE43922 | Down | -0.5822839965 |
| GSE24585 | Down | -0.0911370626 |
| GSE37065 | Down | -0.4803258249 |
| GSE28863_A1 | Up | 0.9730423907 |
| GSE28863_A2 | Up | 0.5265475433 |
| GSE28863_A3 | Up | 0.0491265324 |
| GSE28863_A4 | Down | -0.2935677977 |
| GSE48662 | Down | -0.3570986989 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| Urokinase | DB00013 | BTD00030 | BIOD00030 |
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT002921 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-29b-3p | MIMAT0000100 | MIRT005669 | Luciferase reporter assay//Microarray//Northern blot//qRT-PCR | Functional MTI | 20971881 |
| hsa-miR-106b-5p | MIMAT0000680 | MIRT044313 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045142 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
