HCSGD entry for RERE
1. General information
| Official gene symbol | RERE |
|---|---|
| Entrez ID | 473 |
| Gene full name | arginine-glutamic acid dipeptide (RE) repeats |
| Other gene symbols | ARG ARP ATN1L DNB1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000118 | Histone deacetylase complex | IEA | cellular_component |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003682 | Chromatin binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA NAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0006338 | Chromatin remodeling | IEA | biological_process |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006607 | NLS-bearing protein import into nucleus | TAS | biological_process |
| GO:0007275 | Multicellular organismal development | IEA | biological_process |
| GO:0008267 | Poly-glutamine tract binding | TAS | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7092783253 | 0.1925775958 | 0.9999902473 | 0.8510468267 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1128992404 |
| GSE13712_SHEAR | Up | 0.3122703970 |
| GSE13712_STATIC | Up | 0.0103972870 |
| GSE19018 | Down | -0.3223733114 |
| GSE19899_A1 | Down | -0.4886665118 |
| GSE19899_A2 | Up | 0.1391716967 |
| PubMed_21979375_A1 | Up | 0.0693985472 |
| PubMed_21979375_A2 | Up | 0.1049551029 |
| GSE35957 | Down | -0.0583600322 |
| GSE36640 | Down | -0.6318926777 |
| GSE54402 | Down | -0.6206916617 |
| GSE9593 | Up | 0.1327829948 |
| GSE43922 | Down | -0.1416134068 |
| GSE24585 | Up | 0.4244045409 |
| GSE37065 | Down | -0.0239428193 |
| GSE28863_A1 | Down | -0.1240176073 |
| GSE28863_A2 | Down | -0.0888419252 |
| GSE28863_A3 | Up | 0.2712961455 |
| GSE28863_A4 | Up | 0.0811817166 |
| GSE48662 | Up | 0.1688046252 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-200b-3p | MIMAT0000318 | MIRT002987 | Luciferase reporter assay | Functional MTI | 17923093 |
| hsa-miR-429 | MIMAT0001536 | MIRT002988 | Luciferase reporter assay | Functional MTI | 17923093 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040598 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-301a-3p | MIMAT0000688 | MIRT044217 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044697 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-200b-3p | MIMAT0000318 | NA | hsa-miR-200b | 17923093 | |||
| hsa-miR-429 | MIMAT0001536 | 1 | hsa-miR-429 | 17923093 | |||
| hsa-miR-429 | MIMAT0001536 | 3 | hsa-miR-429 | 17923093 | |||
| hsa-miR-429 | MIMAT0001536 | 2 | hsa-miR-429 | 17923093 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
