HCSGD entry for MAP1LC3C
1. General information
| Official gene symbol | MAP1LC3C |
|---|---|
| Entrez ID | 440738 |
| Gene full name | microtubule-associated protein 1 light chain 3 gamma |
| Other gene symbols | ATG8J LC3C |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000421 | Autophagic vacuole membrane | IEA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005776 | Autophagic vacuole | ISS | cellular_component |
| GO:0005874 | Microtubule | IEA | cellular_component |
| GO:0006914 | Autophagy | IEA | biological_process |
| GO:0012505 | Endomembrane system | IEA | cellular_component |
| GO:0031090 | Organelle membrane | ISS | cellular_component |
| GO:0031410 | Cytoplasmic vesicle | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6953549903 | 0.7127871585 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0115291088 |
| GSE13712_SHEAR | Up | 0.0034551463 |
| GSE13712_STATIC | Up | 0.4287919809 |
| GSE19018 | Down | -0.0288445945 |
| GSE19899_A1 | Up | 0.0293170403 |
| GSE19899_A2 | Down | -0.0680899130 |
| PubMed_21979375_A1 | Down | -0.4234252164 |
| PubMed_21979375_A2 | Up | 0.0206392157 |
| GSE35957 | Down | -0.0648629242 |
| GSE36640 | Up | 0.1119891932 |
| GSE54402 | Down | -0.2916098336 |
| GSE9593 | Up | 0.1932712132 |
| GSE43922 | Up | 0.0340857639 |
| GSE24585 | Up | 0.0772707887 |
| GSE37065 | Down | -0.0392096827 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.1205879761 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029586 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
