HCSGD entry for TRPM1

1. General information

Official gene symbolTRPM1
Entrez ID4308
Gene full nametransient receptor potential cation channel, subfamily M, member 1
Other gene symbolsCSNB1C LTRPC1 MLSN1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005261Cation channel activityIEAmolecular_function
GO:0005262Calcium channel activityIDAmolecular_function
GO:0005887Integral component of plasma membraneTAScellular_component
GO:0006810TransportTASbiological_process
GO:0007165Signal transductionIEAbiological_process
GO:0007216G-protein coupled glutamate receptor signaling pathwayIMPbiological_process
GO:0007601Visual perceptionIMPbiological_process
GO:0016021Integral component of membraneIEAcellular_component
GO:0034220Ion transmembrane transportIDA TASbiological_process
GO:0035841New growing cell tipIEAcellular_component
GO:0046548Retinal rod cell developmentIEAbiological_process
GO:0060402Calcium ion transport into cytosolIDAbiological_process
GO:0070588Calcium ion transmembrane transportIDA TASbiological_process
GO:0071482Cellular response to light stimulusIEA IMPbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.92145989510.69181149650.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0027579021
GSE13712_SHEARDown-0.0751043046
GSE13712_STATICDown-0.0426890788
GSE19018Up0.1045327548
GSE19899_A1Up0.0480719362
GSE19899_A2Up0.0793578932
PubMed_21979375_A1Down-0.0661216553
PubMed_21979375_A2Down-0.0463934367
GSE35957Up0.0725714294
GSE36640Down-0.0763152288
GSE54402Down-0.0779438595
GSE9593Up0.0017601047
GSE43922Up0.0138646840
GSE24585Up0.0188605824
GSE37065Down-0.1114498250
GSE28863_A1Down-0.1291430919
GSE28863_A2Down-0.1109370443
GSE28863_A3Up0.1184581041
GSE28863_A4Up0.0552625718
GSE48662Down-0.0114532263

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-26b-5pMIMAT0000083MIRT029939MicroarrayFunctional MTI (Weak)19088304
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.