HCSGD entry for ABLIM1
1. General information
| Official gene symbol | ABLIM1 |
|---|---|
| Entrez ID | 3983 |
| Gene full name | actin binding LIM protein 1 |
| Other gene symbols | ABLIM LIMAB1 LIMATIN abLIM-1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003779 | Actin binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0007010 | Cytoskeleton organization | IEA | biological_process |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0007601 | Visual perception | TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0009887 | Organ morphogenesis | TAS | biological_process |
| GO:0015629 | Actin cytoskeleton | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1868441511 | 0.1562434596 | 0.8432679355 | 0.7631848395 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1491037513 |
| GSE13712_SHEAR | Down | -0.0766471888 |
| GSE13712_STATIC | Down | -0.4462725618 |
| GSE19018 | Up | 0.6540063487 |
| GSE19899_A1 | Down | -0.0636584658 |
| GSE19899_A2 | Up | 0.3398352384 |
| PubMed_21979375_A1 | Down | -1.0625297643 |
| PubMed_21979375_A2 | Up | 0.3192266233 |
| GSE35957 | Up | 0.2929175163 |
| GSE36640 | Up | 0.3446656391 |
| GSE54402 | Down | -0.3097478903 |
| GSE9593 | Up | 0.2070724227 |
| GSE43922 | Down | -0.5787397129 |
| GSE24585 | Down | -0.4042651404 |
| GSE37065 | Up | 0.4276237904 |
| GSE28863_A1 | Down | -0.3384949620 |
| GSE28863_A2 | Up | 0.2260465727 |
| GSE28863_A3 | Down | -0.3429084472 |
| GSE28863_A4 | Up | 0.1766699243 |
| GSE48662 | Up | 0.2436786093 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017206 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-122-5p | MIMAT0000421 | MIRT023261 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040415 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043444 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044742 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048532 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
