HCSGD entry for LFNG
1. General information
| Official gene symbol | LFNG |
|---|---|
| Entrez ID | 3955 |
| Gene full name | LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
| Other gene symbols | SCDO3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001541 | Ovarian follicle development | IEA | biological_process |
| GO:0001756 | Somitogenesis | IEA | biological_process |
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005576 | Extracellular region | NAS | cellular_component |
| GO:0007143 | Female meiosis | IEA | biological_process |
| GO:0007219 | Notch signaling pathway | TAS | biological_process |
| GO:0007386 | Compartment pattern specification | IEA | biological_process |
| GO:0009887 | Organ morphogenesis | NAS | biological_process |
| GO:0014807 | Regulation of somitogenesis | IEA | biological_process |
| GO:0030173 | Integral component of Golgi membrane | IEA | cellular_component |
| GO:0032092 | Positive regulation of protein binding | IEA | biological_process |
| GO:0033829 | O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity | IEA | molecular_function |
| GO:0045747 | Positive regulation of Notch signaling pathway | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8645686448 | 0.0266043957 | 0.9999902473 | 0.3120562834 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2737781216 |
| GSE13712_SHEAR | Down | -0.7275682751 |
| GSE13712_STATIC | Down | -0.9519746717 |
| GSE19018 | Down | -1.1797994374 |
| GSE19899_A1 | Up | 0.0309825577 |
| GSE19899_A2 | Down | -0.0499732505 |
| PubMed_21979375_A1 | Down | -0.0693403631 |
| PubMed_21979375_A2 | Down | -0.2142765012 |
| GSE35957 | Down | -0.2644462963 |
| GSE36640 | Down | -0.3354634010 |
| GSE54402 | Up | 0.0994514220 |
| GSE9593 | Down | -0.7089434126 |
| GSE43922 | Down | -0.0401819724 |
| GSE24585 | Up | 0.3007676923 |
| GSE37065 | Down | -0.4056276773 |
| GSE28863_A1 | Up | 0.0809780167 |
| GSE28863_A2 | Up | 0.3318642507 |
| GSE28863_A3 | Up | 0.2126126404 |
| GSE28863_A4 | Up | 0.0338121636 |
| GSE48662 | Up | 0.6993205157 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018104 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-132-3p | MIMAT0000426 | MIRT021806 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025038 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
